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pedigrees
genotypes
grms
model
eqn
poly
jobs
solve
sample
pevsample
mcemreml
yh
samplers
sampler name
solvers
solver name
- host: solvers
- hosts mutually exclusive elements of which hard-coded names define the solver type
pcgiod
- host: solver name
- defines the solver is an iteration-on-data preconditioned gradient solver
| element name
|
element type
|
host element
|
hosts elements
|
element function
|
key string key word
|
key string variable
|
key string function
|
key string type
|
| pedigrees
|
Automatic-optional
|
root
|
yes
|
host elements of specific pedigrees
|
pedigrees
|
pedigree names
|
nominates further elements
|
compulsory
|
| pedigree name
|
Nominated-compulsory
|
pedigrees
|
no
|
host information about a specific pedigree
|
file
|
pedigree file name
|
provides pedigree file name
|
compulsory
|
| switch
|
probabilistic
|
pedigree is probabilistic
|
optional
|
| selfing
|
pedigree contains selfing
|
| phantomparents
|
integer
|
provides the number of individuals at the top of the pedigree which are phantom parents
|
optional
|