Difference between revisions of "Parameter file elements"
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| Line 31: | Line 31: | ||
|| compulsory | || compulsory | ||
|- | |- | ||
|| '''switch''' | | rowspan="2"| '''switch''' | ||
|| '''probabilistic''' | || '''probabilistic''' | ||
|| pedigree is probabilistic | || pedigree is probabilistic | ||
|| optional | || optional | ||
|- | |- | ||
|| '''selfing''' | || '''selfing''' | ||
|| pedigree contains selfing | || pedigree contains selfing | ||
Revision as of 08:23, 3 January 2021
| element name | element type | host element | hosts elements | element function | key string key word | key string variable | key string function | key string type |
|---|---|---|---|---|---|---|---|---|
| pedigrees | Automatic-optional | root | yes | host elements of specific pedigrees | pedigrees | pedigree names | nominates further elements | compulsory |
| pedigree name | Nominated-compulsory | pedigrees | no | host information about a specific pedigree | file | pedigree file name | provides pedigree file name | compulsory |
| switch | probabilistic | pedigree is probabilistic | optional | |||||
| selfing | pedigree contains selfing | |||||||
| phantomparents | integer | provides the number of individuals at the top of the pedigree which are phantom parents | optional |