Difference between revisions of "Parameter file elements"
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=='''poly'''== | =='''poly'''== | ||
='''jobs'''= | ='''jobs'''= | ||
host: '''root''' | |||
hosts: | |||
*keystring | |||
=='''solve'''== | =='''solve'''== | ||
=='''sample'''== | =='''sample'''== | ||
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=='''mcemreml'''== | =='''mcemreml'''== | ||
=='''yh'''== | =='''yh'''== | ||
='''samplers'''= | ='''samplers'''= | ||
==''sampler name''== | ==''sampler name''== | ||
Revision as of 10:48, 3 January 2021
pedigrees
genotypes
grms
model
eqn
poly
jobs
host: root hosts:
- keystring
solve
sample
pevsample
mcemreml
yh
samplers
sampler name
solvers
- host: root
solver name
- host: solvers
- hosts mutually exclusive elements of which hard-coded names define the solver type
pcgiod
- host: solver name
- defines the solver is an iteration-on-data preconditioned gradient solver
| element name | element type | host element | hosts elements | element function | key string key word | key string variable | key string function | key string type |
|---|---|---|---|---|---|---|---|---|
| pedigrees | Automatic-optional | root | yes | host elements of specific pedigrees | pedigrees | pedigree names | nominates further elements | compulsory |
| pedigree name | Nominated-compulsory | pedigrees | no | host information about a specific pedigree | file | pedigree file name | provides pedigree file name | compulsory |
| switch | probabilistic | pedigree is probabilistic | optional | |||||
| selfing | pedigree contains selfing | |||||||
| phantomparents | integer | provides the number of individuals at the top of the pedigree which are phantom parents | optional |