Difference between revisions of "Parameter file elements"

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='''solvers'''=
='''solvers'''=
==''solver name''==
==''solver name''==
*hosts mutually exclusive elements of which hard-coded names define the solver type
==='''pcgiod'''===
==='''pcgiod'''===
*the solver is an iteration-on-data preconditioned gradient solver


{| class="wikitable sortable"
{| class="wikitable sortable"

Revision as of 10:39, 3 January 2021

pedigrees

genotypes

grms

model

eqn

poly

jobs

solve

sample

pevsample

mcemreml

yh

samplers

sampler name

solvers

solver name

  • hosts mutually exclusive elements of which hard-coded names define the solver type

pcgiod

  • the solver is an iteration-on-data preconditioned gradient solver
element name element type host element hosts elements element function key string key word key string variable key string function key string type
pedigrees Automatic-optional root yes host elements of specific pedigrees pedigrees pedigree names nominates further elements compulsory
pedigree name Nominated-compulsory pedigrees no host information about a specific pedigree file pedigree file name provides pedigree file name compulsory
switch probabilistic pedigree is probabilistic optional
selfing pedigree contains selfing
phantomparents integer provides the number of individuals at the top of the pedigree which are phantom parents optional