Difference between revisions of "Parameter file elements"
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| Line 1: | Line 1: | ||
{| class="wikitable sortable" | {| class="wikitable sortable" | ||
|- | |- | ||
! element name | |||
! element type | |||
! host element | |||
! hosts elements | |||
! element function | |||
! key string key word | |||
! key string variable | |||
! key string function | |||
! key string type | |||
|- | |- | ||
|| '''pedigrees''' | || '''pedigrees''' | ||
| Line 22: | Line 20: | ||
|| nominates further elements | || nominates further elements | ||
|| compulsory | || compulsory | ||
|- | |- | ||
|| ''pedigree name'' | || ''pedigree name'' | ||
| Line 34: | Line 30: | ||
|| provides pedigree file name | || provides pedigree file name | ||
|| compulsory | || compulsory | ||
|- | |- | ||
|| '''switch''' | || '''switch''' | ||
| Line 41: | Line 35: | ||
|| pedigree is probabilistic | || pedigree is probabilistic | ||
|| optional | || optional | ||
|- | |- | ||
|| '''selfing''' | || '''selfing''' | ||
|| pedigree contains selfing | || pedigree contains selfing | ||
|- | |- | ||
|| '''phantomparents''' | || '''phantomparents''' | ||
| Line 53: | Line 43: | ||
|| provides the number of individuals at the top of the pedigree which are phantom parents | || provides the number of individuals at the top of the pedigree which are phantom parents | ||
|| optional | || optional | ||
|- | |- | ||
|} | |} | ||
Revision as of 07:46, 3 January 2021
| element name | element type | host element | hosts elements | element function | key string key word | key string variable | key string function | key string type |
|---|---|---|---|---|---|---|---|---|
| pedigrees | Automatic-optional | root | yes | host elements of specific pedigrees | pedigrees | pedigree names | nominates further elements | compulsory |
| pedigree name | Nominated-compulsory | pedigrees | no | host information about a specific pedigree | file | pedigree file name | provides pedigree file name | compulsory |
| switch | probabilistic | pedigree is probabilistic | optional | |||||
| selfing | pedigree contains selfing | |||||||
| phantomparents | integer | provides the number of individuals at the top of the pedigree which are phantom parents | optional |