Difference between revisions of "Parameter file elements"

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{|class="wikitable sortable"
{| style="border-spacing:0;width:30.267cm;"
!element name
!element type
!host element
!element function
!key strings
!key string function
!hosts elements
|-
|-
|'''pedigrees'''
|| element name
|automatic-optional
|| element type
|'''root'''
|| host element
|host elements of specific pedigrees
|| hosts elements
|'''pedigrees''':''a,b,...''
|| element function
|nominates user-named elements
|| key string key word
|yes
|| key string variable
|| key string function
|| key string type
||  
||  
|-
|| '''pedigrees'''
|| Automatic-optional
|| '''root'''
|| yes
|| host elements of specific pedigrees  
|| '''pedigrees'''
|| ''pedigree names''
|| nominates further elements
|| compulsory
||  
||  
|-
|| ''pedigree name''
|| Nominated-compulsory
|| '''pedigrees'''
|| no
|| host information about a specific pedigree
|| '''file'''
|| ''pedigree file name''
|| provides pedigree file name
|| compulsory
||  
||  
|-
|| '''switch'''
|| '''probabilistic'''
|| pedigree is probabilistic
|| optional
||  
||  
|-
|| '''selfing'''
|| pedigree contains selfing
||  
||  
|-
|| '''phantomparents'''
|| integer
|| provides the number of individuals at the top of the pedigree which are phantom parents
|| optional
||  
||  
|-
||  
||  
||  
||  
||  
||  
||  
||  
||  
||  
||  
|-
||  
||  
||  
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|-
|-
|''pedigree name''
|nominated-compulsory
|'''pedigrees'''
|provides information about a pedigree
|'''file''': pedigree file name
|}
|}

Revision as of 07:16, 3 January 2021

element name element type host element hosts elements element function key string key word key string variable key string function key string type    
pedigrees Automatic-optional root yes host elements of specific pedigrees pedigrees pedigree names nominates further elements compulsory    
pedigree name Nominated-compulsory pedigrees no host information about a specific pedigree file pedigree file name provides pedigree file name compulsory    
switch probabilistic pedigree is probabilistic optional    
selfing pedigree contains selfing    
phantomparents integer provides the number of individuals at the top of the pedigree which are phantom parents optional    
                     
                     
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