Difference between revisions of "Parameter file elements"
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host: '''root''' | host: '''root''' | ||
content: | |||
* | *key strings | ||
{| class="wikitable" | {| class="wikitable" | ||
|type | |type | ||
| Line 29: | Line 29: | ||
|compulsory | |compulsory | ||
|'''jobs''' | |'''jobs''' | ||
|csv-list | |csv word-list | ||
|'''solve,sample,pevsample,mcemreml,yh''' | |'''solve,sample,pevsample,mcemreml,yh''' | ||
|none | |none | ||
|job sequence is determined by the list sequence. list content determines nominated-compulsory elements | |job sequence is determined by the list sequence. list content determines nominated-compulsory elements | ||
|} | |} | ||
*nominated-compulsory elements | |||
=='''solve'''== | =='''solve'''== | ||
<syntaxhighlight lang="xml" line> | |||
<solve> | |||
solver: mysolver | |||
</solver> | |||
</syntaxhighlight> | |||
host: '''jobs''' | |||
content: | |||
*key strings | |||
{| class="wikitable" | |||
|type | |||
|word | |||
|variable type | |||
|variable values | |||
|default | |||
|explanation | |||
|- | |||
|compulsory | |||
|'''solver''' | |||
|word | |||
|''solver name'' | |||
|none | |||
|''solver name'' must be the name of a previously defined solver | |||
|} | |||
=='''sample'''== | =='''sample'''== | ||
=='''pevsample'''== | =='''pevsample'''== | ||
Revision as of 11:16, 3 January 2021
pedigrees
genotypes
grms
model
eqn
poly
jobs
Example:
<jobs>
jobs: solve,yh
...
</jobs>host: root
content:
- key strings
| type | word | variable type | variable values | default | explanation |
| compulsory | jobs | csv word-list | solve,sample,pevsample,mcemreml,yh | none | job sequence is determined by the list sequence. list content determines nominated-compulsory elements |
- nominated-compulsory elements
solve
<solve>
solver: mysolver
</solver>host: jobs
content:
- key strings
| type | word | variable type | variable values | default | explanation |
| compulsory | solver | word | solver name | none | solver name must be the name of a previously defined solver |
sample
pevsample
mcemreml
yh
samplers
sampler name
solvers
- host: root
solver name
- host: solvers
- hosts mutually exclusive elements of which hard-coded names define the solver type
pcgiod
- host: solver name
- defines the solver is an iteration-on-data preconditioned gradient solver
| element name | element type | host element | hosts elements | element function | key string key word | key string variable | key string function | key string type |
|---|---|---|---|---|---|---|---|---|
| pedigrees | Automatic-optional | root | yes | host elements of specific pedigrees | pedigrees | pedigree names | nominates further elements | compulsory |
| pedigree name | Nominated-compulsory | pedigrees | no | host information about a specific pedigree | file | pedigree file name | provides pedigree file name | compulsory |
| switch | probabilistic | pedigree is probabilistic | optional | |||||
| selfing | pedigree contains selfing | |||||||
| phantomparents | integer | provides the number of individuals at the top of the pedigree which are phantom parents | optional |